Scientific software and libraries

LaJolla
Biomolecular alignment and substructure search using an n-gram based approach (Proteins, RNA)
suiteRNA Investigation in string based indexing of RNA structural information.
lrrr A novel method for determining binding sites of known ligands on proteins [stalled and replaced by LaJolla2].

Scientific online resources

SCISURFER.COM A tool to manage the information overload by hundreds of publications each week.
Superlooper A tool for protein loop modeling. Specially tailored for GPCRs [finished].
Superimposé A server integrating algorithms and databases for an efficient search [finished].
SuperSite (aka Binding Site Encyclopedia): Making the knowledge about binding sites in the PDB accessible and searchable in 3D space.